- sismonr: Simulation of In Silico Multi-Omic Networks with adjustable ploidy and post-transcriptional regulation in R
- METADOCK 2: A high-throughput parallel metaheuristic scheme for molecular docking
- Differential network analysis of multiple human tissue interactomes highlights tissue-selective processes and genetic disorder genes
- Performance difference of graph-based and alignment-based hybrid error correction methods for error-prone long reads
- cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
- Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
- Performance difference of graph-based and alignment-based hybrid error correction methods for error-prone long reads
- cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
- Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
- ShinyOmics: collaborative exploration of omics-data
- Visualization of circular RNAs and their internal splicing events from transcriptomic data
- RxnBLAST: Molecular Scaffold and Reactive Chemical Environment Feature Extractor for Biochemical Reactions
- Simulating trees with millions of species
- 3D-Cell-Annotator: an open-source active surface tool for single cell segmentation in 3D microscopy images
- BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data
- Inference of Gene Regulatory Networks Based on Nonlinear Ordinary Differential Equations
- Targeted Realignment of LC-MS Profiles by Neighbor-wise Compound-specific Graphical Time Warping with Misalignment Detection
- The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences
- Curation and Annotation of Planarian Gene Expression Patterns with Segmented Reference Morphologies
- Secure multiparty computation for privacy-preserving drug discovery
Whats new in Bioinformatics
Genome Biology
- Performance difference of graph-based and alignment-based hybrid error correction methods for error-prone long reads
- cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
- Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
- CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells
- A benchmark of batch-effect correction methods for single-cell RNA sequencing data
- HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution
- DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
- Chromatin interactome mapping at 139 independent breast cancer risk signals
- Non-coding RNAs underlie genetic predisposition to breast cancer
- Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains