- Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
- Dashing: fast and accurate genomic distances with HyperLogLog
- RocaSec: A standalone GUI-based package for robust co-evolutionary analysis of proteins
- Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
- Dashing: fast and accurate genomic distances with HyperLogLog
- Relation extraction between bacteria and biotopes from biomedical texts with attention mechanisms and domain-specific contextual representations
- A novel target convergence set based random walk with restart for prediction of potential LncRNA-disease associations
- Identifying gene-specific subgroups: an alternative to biclustering
- An improved random forest-based computational model for predicting novel miRNA-disease associations
- DNA Readout Viewer (DRV): visualisation of specificity determining patterns of protein binding DNA segments
- schex avoids overplotting for large single cell RNA-sequencing datasets
- An Efficient Approach based on Multi-sources Information to Predict CircRNA-disease Associations Using Deep Convoltional Neural Network
- Episo: quantitative estimation of RNA 5-methylcytosine at isoform level by high-throughput sequencing of RNA treated with bisulfite
- eCAMI: simultaneous classification and motif identification for enzyme annotation
- Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level
- CRISPR-Cas13d mediates robust RNA virus interference in plants
- eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTR
- deltaRpkm: an R package for a rapid detection of differential gene presence between related bacterial genomes
- Exploring the 2D and 3D structural properties of topologically associating domains
- Virtual Grid Engine: a simulated grid engine environment for large-scale supercomputers
Whats new in Bioinformatics
Genome Biology
- Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
- Dashing: fast and accurate genomic distances with HyperLogLog
- CRISPR-Cas13d mediates robust RNA virus interference in plants
- eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTR
- methylCC: technology-independent estimation of cell type composition using differentially methylated regions
- ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning
- Characterizing the interplay between gene nucleotide composition bias and splicing
- 547 transcriptomes from 44 brain areas reveal features of the aging brain in non-human primates
- Improved metagenomic analysis with Kraken 2
- The Aquilegia genome reveals a hybrid origin of core eudicots