- iPNHOT: a knowledge-based approach for identifying protein-nucleic acid interaction hot spots
- PDXGEM: patient-derived tumor xenograft-based gene expression model for predicting clinical response to anticancer therapy in cancer patients
- Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference
- Toward a more holistic method of genome assembly assessment
- MMiRNA-Viewer2, a bioinformatics tool for visualizing functional annotation for MiRNA and MRNA pairs in a network
- Dysregulation of cancer genes by recurrent intergenic fusions
- The regulatory landscape of early maize inflorescence development
- Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity
- Mapping regulatory variants controlling gene expression in drought response and tolerance in maize
- Decoding the evolutionary response to prostate cancer therapy by plasma genome sequencing
- Reanalysis of Genome Sequences of tomato accessions and its wild relatives: Development of tomato genomic variation (TGV) database integrating SNPs and INDELs polymorphisms
- Deep learning method for data association in particle tracking
- Dysregulation of cancer genes by recurrent intergenic fusions
- The regulatory landscape of early maize inflorescence development
- Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity
- Mapping regulatory variants controlling gene expression in drought response and tolerance in maize
- Decoding the evolutionary response to prostate cancer therapy by plasma genome sequencing
- Single-cell ATAC-seq signal extraction and enhancement with SCATE
- Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers
- Sparse reduced-rank regression for integrating omics data
Whats new in Bioinformatics
Genome Biology
- Dysregulation of cancer genes by recurrent intergenic fusions
- The regulatory landscape of early maize inflorescence development
- Exploring neighborhoods in large metagenome assembly graphs using spacegraphcats reveals hidden sequence diversity
- Mapping regulatory variants controlling gene expression in drought response and tolerance in maize
- Decoding the evolutionary response to prostate cancer therapy by plasma genome sequencing
- Single-cell ATAC-seq signal extraction and enhancement with SCATE
- Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers
- Genomic analysis of the domestication and post-Spanish conquest evolution of the llama and alpaca
- Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II, and Pol III
- Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation